August 2005 BioGeometry Meeting @ NCAT

Monday, August 22

9:00Welcome
by Solomon Bililign and Robert Gdanitz
9:10-10:50 Chair: Jack Snoeyink
9:10Structural alignment via Delaunay tetrahedralization
by Charlie Carter
9:50 Rotamer trie: storing & evaluating sets of rotamers
by Andrew Leaver-Fay
view .ppt
10:20 Primary structure of protein interfaces
by Jeff Headd
10:50 Break
11:10-12:10 Chair: Alex Tropsha
11:10 Metal binding to modified bases and nucleosides
by Iskra Magick
view .ppt
11:40 Protein-protein interactions in blood-coagulation cascade: application of protein docking and MD simulation methods
by Divi Venkateswarlu
view .pdf
12:10 Lunch
2:00-3:00 Chair: Johannes Rudolph
2:00 Qualitative curve descriptions (using spanners)
by Daniel Russel
view .ppt
2:30 Segmentation for low-resolutional deforming protein structures
by Yusu Wang
view .ppt
3:00 Break
3:30 PI Meeting
6: 00 Restaurant Dinner

Tuesday, August 23

9:00-10:40 Chair: Yusu Wang
9:00 Conformational space of a flexible protein loop
by Jean-Claude Latombe
view .ppt
9:40 Local density of protons: evaluating the quality of NMR structures
by Andrew Ban
10:10 Packing quality of atoms in proteins
by Madhu Vaidya
view .ppt
10:40 Break
11:00-12:40 Chair: Charlie Carter
11:00 Combinatorial rigidity & protein allostery
by Andrea Mantler
view .pdf
11:30 Mean shape and protein backbone alignment
by Jeff Phillips
view .pdf
12:00 Classifying protein structures
by Michael Levitt
12:40 Lunch
Solomon Bililign
Dmitriy Morozov, Herbert Edelsbrunner, Yuriy Mileyko
Andrew Ban
Michael Levitt
Alex Tropsha, Fred Brooks, Johannes Rudolph
Divi Venkateswarlu
Madhu Vaidya, Amit Patel, Jack Snoeyink