These Ph.D. graduates did significant work on the BioGeometry project in conjunction with their doctoral studies. Dissertation titles and additional information are provided.
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Serkan Apaydin
Stochastic Roadmap Simulation: An Efficient Representation and Algorithm for Analyzing Molecular Motion
(view pdf) Supervisor: Jean-Claude Latombe School: Stanford, 2004 Currently: Postdoc, Dartmouth, Computer Science |
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Hamish Carr
Topological Manipulation of Isosurfaces
(view pdf) Supervisor: Jack Snoeyink School: University of British Columbia, 2004Currently: Lecturer, University College Dublin, Computer Science |
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Itay Lotan
Algorithms Exploiting the Chain Structure of Proteins
(view pdf) Supervisor: Jean-Claude Latombe School: Stanford Currently: Postdoc, UC Berkeley, Bioengineering |
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Rachel Kolodny
Comparing and Modeling Protein Structure
(view pdf) Supervisor: Leonidas Guibas and Michael Levitt School: Stanford Currently: Postdoc, Columbia, Biochemistry & Molecular Biophysics |
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Bala Krishnamoorthy
Pre-Conditioning Integer Programs using
Column Basis Reduction AND Geometry and Topology of Protein Structure
(view pdf) Supervisor: Alex Tropsha School: University of North Carolina Chapel Hill, 2004 Currently: Assistant Professor, Washington State, Math |
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Loren Looger
Computational Design of Receptors and Enzymes
Supervisor: Homme Hellinga
School: Duke, 2003
Currently: Carnegie Institute of Washington, Plant Biology
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Nabil Mustafa
Simplification, Estimation, and Classification of Geometric Shapes
(view pdf) Supervisor: Pankaj Agarwal School: Duke, 2004 Currrently: Postdoc, Max-Planck-Institute |
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Vijay Natarajan
Topological Analysis of Scalar Functions for Scientific Data Visualization
(view pdf) Supervisor: Herbert Edelsbrunner School: Duke, 2004 Currently: Postdoc, UC Davis, Institute for Data Analysis and Visualization |
